Tutorial
Running the Tutorial
To run an example set of jobs use the following commands:
conda activate snekmer
cd resources/tutorial/demo_example
bash run_demo.sh
This will execute the snekmer model, search, and cluster modes in succession on a set of three input families and produce output files for each in output.
Running the Learn/Apply Tutorial
To run an example set of fasta files use the following commands:
conda activate snekmer
cd resources/snekmer_learnapp_tutorial.ipynb
jupyter notebook snekmer_learnapp_tutorial.ipynb
Evaluating Results
See the Accessing Results section for more details.
to be continued…