Tutorial

Running the Tutorial

To run an example set of jobs use the following commands:

conda activate snekmer
cd resources/tutorial/demo_example
bash run_demo.sh

This will execute the snekmer model, search, and cluster modes in succession on a set of three input families and produce output files for each in output.

Running the Learn/Apply Tutorial

To run an example set of fasta files use the following commands:

conda activate snekmer
cd resources/snekmer_learnapp_tutorial.ipynb
jupyter notebook snekmer_learnapp_tutorial.ipynb

Evaluating Results

See the Accessing Results section for more details.

to be continued…