Tutorial

Learn/Apply Tutorials

Tutorial	Description
Quick Start (easy)	Recommended starting point. Single-command pipeline using the included demo data, with output interpretation and filtering guidance.
Full Pipeline Reference (learn / apply)	For advanced use: manual workspace setup, adding new training data, reusing a trained model across multiple query sets.

Model / Cluster / Search Tutorial

Tutorial	Description
Model / Cluster / Search	Supervised ML modeling, unsupervised clustering, and sequence search using the included demo data.

Evaluating Results

Snekmer writes an HTML summary report to output/Snekmer_<Mode>_Report.html for each completed run. Below is an example report from Apply:

See the Accessing Results section for details on all output files.